PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5M63

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	CDRLenMismatch	-1.0	H1	13	H1-13-1	19	KASGLDLPSYFMC	BBBLEBAAABBBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	Rb_IGHV1S40*01	36.4	H2	11	H2-11-*	-1	CIRSSSNEiLY	BBBABEBBBBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	Rb_IGHV1S40*01	100.0	H3	19	H3-19-*	-1	ARDYFGEgdvfyHGGVFGL
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	Rb_IGHV1S40*01	100.0	H4	7	H4-7-1	8	KTSSTTV	BABAABB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	76.9	L1	13	L1-13-3	10	QSSQSLynNNRLA	BBABBBBLLABBB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	75.0	L2	8	L2-8-1	12	YKASTLES	BLLABBBB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	22.2	L3	12	L3-12-*	-1	AGYKSNSddgTA
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	83.3	L4	6	L4-6-1	9	GAGTQF	EBEABB
M	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	CDRLenMismatch	-1.0	H1	13	H1-13-1	19	KASGLDLPSYFMC	BBBLBBAAABBBB
M	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	Rb_IGHV1S40*01	36.4	H2	11	H2-11-*	-1	CIRSSSNEiLY	BBBABEBBBBB
M	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	Rb_IGHV1S40*01	100.0	H3	19	H3-19-*	-1	ARDYFGEgdvfyHGGVFGL
M	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	100.0	Rb_IGHV1S40*01	100.0	H4	7	H4-7-1	7	KTSSTTV	BABAABB
N	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	76.9	L1	13	L1-13-3	10	QSSQSLynNNRLA	BBABBBBLLABBB
N	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	75.0	L2	8	L2-8-1	12	YKASTLES	BLLABBBB
N	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	22.2	L3	12	L3-12-*	-1	AGYKSNSddgTA
N	kappa	Oryctolagus.cuniculus	Rb_IGKV1S12*01	89.6	Rb_IGKV1S12*01	83.3	L4	6	L4-6-1	9	GAGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022