PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5KOV

#CDRs = 8; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	19	TVSGFSLIDYGVH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-1	11	VIWTGGSTD	BBBAALBBB
C	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLEABBAB
C	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	11	KDNSKSQV	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	22	RASQDISNYLN	BBABBALLABB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	12	YYTSRLHS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	9	QQGNTFPPT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	14	GSGTDY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	20	TVSGFSLIDYGVH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-1	11	VIWTGGSTD	BBBAALBBB
E	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLbLBBAB
E	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	11	KDNSKSQV	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	20	RASQDISNYLN	BBABBALLBBB
E	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	15	YYTSRLHS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	8	QQGNTFPPT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	15	GSGTDY	EBEABB
I	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	19	TVSGFSLIDYGVH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-1	11	VIWTGGSTD	BBBAALBBB
I	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLBABBAB
I	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	11	KDNSKSQV	BBAAALBB
I	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-*	-1	RASQDISNYLN	BBABBBALABB
I	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	13	YYTSRLHS	BLLABBBB
I	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	8	QQGNTFPPT	BBAABBbBB
I	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	15	GSGTDY	EBEABB
K	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	19	TVSGFSLIDYGVH	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-1	11	VIWTGGSTD	BBBAALBBB
K	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLLAALAB
K	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	10	KDNSKSQV	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	19	RASQDISNYLN	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	13	YYTSRLHS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	10	QQGNTFPPT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	15	GSGTDY	EBEABB
O	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	20	TVSGFSLIDYGVH	BBBLBBAAABBBB
O	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-1	11	VIWTGGSTD	BBBAALBBB
O	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLaABBAB
O	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	10	KDNSKSQV	BBAAALBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-*	-1	RASQDISNYLN	BBABBALLABB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	13	YYTSRLHS	BLLABBBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-2	10	QQGNTFPPT	BBAABABBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	15	GSGTDY	EBEABB
Q	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-*	-1	RASQDISNYLN
Q	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-*	-1	YYTSRLHS	BLLBBBBA
Q	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-*	-1	qqgntfppt
Q	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-*	-1	gsgtdy
Q	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-*	-1	TVSGFSLIDYGVH	BBAABBAAABBBB
Q	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-*	-1	VIWTGGSTd
Q	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLEABBAB
Q	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	11	KDNSKSQV	BBAAALBB
U	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	19	TVSGFSLIDYGVH	BBBLBBAAABBBB
U	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-1	11	VIWTGGSTD	BBBAALBBB
U	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLEABBAB
U	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	11	KDNSKSQV	BBAAALBB
U	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-*	-1	RASQDISNYLN	BBABBBALABB
U	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	13	YYTSRLHS	BLLABBBB
U	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	10	QQGNTFPPT	BBAABBbBB
U	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	15	GSGTDY	EBEABB
W	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-*	-1	RASQDISNYLN
W	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-*	-1	YYTSRLHs
W	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	85.7	L3	9	L3-9-*	-1	QQGNTFPPT
W	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-*	-1	gsgtdy
W	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	84.6	H1	13	H1-13-1	20	TVSGFSLIDYGVH	BBBLBBAAABBBB
W	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	88.9	H2	9	H2-9-*	-1	VIWTGGSTD	BBBBLELBB
W	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	50.0	H3	11	H3-11-*	-1	GRPYYGNVMDY	BBBBLEABBAB
W	heavy	Mus.musculus	Mo_IGHV2-2*02	97.2	Mo_IGHV2-2*02	100.0	H4	8	H4-8-1	13	KDNSKSQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022