PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5KEN

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	76.9	H1	13	H1-13-*	-1	KASGSSFTGFSMN	BBABAAAAAALBB
C	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	50.0	H2	10	H2-10-1	16	NIDTYYGGTT	BBBAAALBBB
C	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	100.0	H3	12	H3-12-*	-1	ARSAYYGSTFAY	BBBBABAABBBB
C	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	100.0	H4	8	H4-8-1	12	VDKSSSTA	BBAAALBB
D	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	100.0	L1	11	L1-11-2	16	RASENIYSYLA	BBABBALLBBB
D	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	21	YNAKTLIE	BLEABBBB
D	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	85.7	L3	9	L3-9-cis7-2	21	QHHFGTPFT	BBABEBbBB
D	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	20	GSGTQF	EBEABB
G	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	76.9	H1	13	H1-13-*	-1	KASGSSFTGFSMN	BBABAAAAAALBB
G	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	50.0	H2	10	H2-10-1	15	NIDTYYGGTT	BBBAAALBBB
G	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	100.0	H3	12	H3-12-*	-1	ARSAYYGSTFAY	BBBBABAABBBB
G	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	100.0	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB
H	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	100.0	L1	11	L1-11-2	13	RASENIYSYLA	BBABBALLBBB
H	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	21	YNAKTLIE	BLEABBBB
H	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	85.7	L3	9	L3-9-cis7-2	20	QHHFGTPFT	BBABEBbBB
H	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	21	GSGTQF	EBEABB
I	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L1	11	L1-11-2	23	KASQNVGTAVA	BBABBALLBBB
I	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L2	8	L2-8-1	22	YSASNRYT	BLLABBBB
I	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L3	9	L3-9-cis7-1	19	QQYSSYPLT	BBAABBbBB
I	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	86.7	H1	15	H1-15-*	-1	AASGFSLSTSgvGVG	BBAABALABBLBBBB
J	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	77.8	H2	9	H2-9-1	20	LIWWDDDKY	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	66.7	H3	14	H3-14-*	-1	ARRDPFGYDNAMGY	BBBAALLBLELBeB
J	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	75.0	H4	8	H4-8-1	10	KDFSRNQV	BBAAALBB
N	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	76.9	H1	13	H1-13-*	-1	KASGSSFTGFSMN	BBABAAAAAALBB
N	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	50.0	H2	10	H2-10-1	16	NIDTYYGGTT	BBBAAALBBB
N	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	100.0	H3	12	H3-12-*	-1	ARSAYYGSTFAY	BBBBABAABBBB
N	heavy	Homo.sapiens	Mo_IGHV1-42*01	91.8	Mo_IGHV1-42*01	100.0	H4	8	H4-8-1	11	VDKSSSTA	BBAAALBB
O	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	100.0	L1	11	L1-11-2	16	RASENIYSYLA	BBABBALLBBB
O	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	21	YNAKTLIE	BLEABBBB
O	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	85.7	L3	9	L3-9-cis7-2	21	QHHFGTPFT	BBABEBbBB
O	kappa	Homo.sapiens	Mo_IGKV12-44*01	98.6	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	20	GSGTQF	EBEABB
P	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L1	11	L1-11-2	21	KASQNVGTAVA	BBABBALLBBB
P	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L2	8	L2-8-1	22	YSASNRYT	BLLABBBB
P	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L3	9	L3-9-cis7-1	19	QQYSSYPLT	BBAABBbBB
P	kappa	Homo.sapiens	Mo_IGKV6-13*01	92.8	Mo_IGKV6-13*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	86.7	H1	15	H1-15-*	-1	AASGFSLSTSgvGVG	BBAABALABBLBBBB
Q	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	77.8	H2	9	H2-9-1	21	LIWWDDDKY	BBBAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	66.7	H3	14	H3-14-*	-1	ARRDPFGYDNAMGY	BBBAAELBLELBeB
Q	heavy	Homo.sapiens	Hu_IGHV2-5*09	63.9	Hu_IGHV2-5*09	75.0	H4	8	H4-8-1	10	KDFSRNQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022