PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5K9Q

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	76.9	H1	13	H1-13-1	14	KASGYSFSRYGIS	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	80.0	H2	10	H2-10-1	10	WISGYTGNTN	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H3	21	H3-21-*	-1	ARDKKQGEVvlpaasfRWFAP
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H4	8	H4-8-1	5	TDTSTSTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	76.9	H1	13	H1-13-1	14	KASGYSFSRYGIS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	80.0	H2	10	H2-10-1	10	WISGYTGNTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H3	21	H3-21-*	-1	ARDKKQGEVvlpaasfRWFAP
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H4	8	H4-8-1	6	TDTSTSTA	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	5	RASQSIGKFLN	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	7	YYASNLET	BLEABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	7	QQSNNVPHT	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	66.7	L4	6	L4-6-1	9	GSETEF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	76.9	H1	13	H1-13-1	14	KASGYSFSRYGIS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	80.0	H2	10	H2-10-*	-1	WISGYTGNTN	BBBAABABBB
J	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H3	21	H3-21-*	-1	ARDKKQGEVvlpaasfRWFAP
J	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H4	8	H4-8-1	8	TDTSTSTA	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	7	RASQSIGKFLN	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	50.0	L2	8	L2-8-*	-1	YYASNLET	BLLABBBA
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	5	QQSNNVPHT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	66.7	L4	6	L4-6-1	6	GSETEF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RASQSIGKFLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	50.0	L2	8	L2-8-*	-1	YYASNLET	BLLABBBA
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	6	QQSNNVPHT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	66.7	L4	6	L4-6-1	6	GSETEF	EBEABB
S	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	76.9	H1	13	H1-13-1	15	KASGYSFSRYGIS	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	80.0	H2	10	H2-10-*	-1	WISGYTGNTN	BBBAABABBB
S	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H3	21	H3-21-*	-1	ARDKKQGEVvlpaasfRWFAP
S	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H4	8	H4-8-*	-1	TDTSTSTA	BBABbLBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	8	RASQSIGKFLN	BBABBAEABBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	9	YYASNLET	BLEABBBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	7	QQSNNVPHT	BBAABBbBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	66.7	L4	6	L4-6-1	6	GSETEF	EBEABB
U	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	76.9	H1	13	H1-13-1	15	KASGYSFSRYGIS	BBBLBBAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	80.0	H2	10	H2-10-*	-1	WISGYTGNTN	BBBAABABBB
U	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H3	21	H3-21-*	-1	ARDKKQGEVvlpaasfRWFAP
U	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H4	8	H4-8-*	-1	TDTSTSTA	BBABbLBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	8	RASQSIGKFLN	BBABBAEABBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	10	YYASNLET	BLEABBBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	5	QQSNNVPHT	BBAABBbBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	66.7	L4	6	L4-6-1	9	GSETEF	EBEABB
X	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	76.9	H1	13	H1-13-1	13	KASGYSFSRYGIS	BBBLBBAAABBBB
X	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	80.0	H2	10	H2-10-*	-1	WISGYTGNTN	BBBAABABBB
X	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H3	21	H3-21-*	-1	ARDKKQGEVvlpaasfRWFAP
X	heavy	Homo.sapiens	Hu_IGHV1-18*01	94.5	Hu_IGHV1-18*01	100.0	H4	8	H4-8-1	7	TDTSTSTA	BBAAALBB
Y	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	8	RASQSIGKFLN	BBABBAEABBB
Y	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	9	YYASNLET	BLEABBBB
Y	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	7	QQSNNVPHT	BBAABBbBB
Y	kappa	Homo.sapiens	Hu_IGKV1-39*01	89.9	Hu_IGKV1-39*01	66.7	L4	6	L4-6-1	8	GSETEF	EBEABB

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