PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JYM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	8	KASGYTFTRYWIN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	13	NIYPGSNITN	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	100.0	H3	15	H3-15-*	-1	AREGIYDGYfPLFPY
B	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	87.5	H4	8	H4-8-1	11	VDTSSNTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	83.3	L1	12	L1-12-1	8	SASSSVSSgNFH	BBABBBBAAABB
B	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	100.0	L2	8	L2-8-*	-1	YRTSNLAS	BLEABBBA
B	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	87.5	L3	9	L3-9-cis7-*	-1	QQWSGYPWT	BBBBEBbBB
B	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	92.3	H1	13	H1-13-1	10	KASGYTFTRYWIN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	80.0	H2	10	H2-10-1	13	NIYPGSNITN	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	100.0	H3	15	H3-15-*	-1	AREGIYDGYfPLFPY
D	heavy	Mus.musculus	Mo_IGHV1S61*01	93.2	Mo_IGHV1S61*01	87.5	H4	8	H4-8-1	11	VDTSSNTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	83.3	L1	12	L1-12-1	9	SASSSVSSgNFH	BBABBBBAAABB
D	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	100.0	L2	8	L2-8-*	-1	YRTSNLAS	BLLABBBA
D	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	87.5	L3	9	L3-9-cis7-*	-1	QQWSGYPWT	BBBBEBbBB
D	kappa	Mus.musculus	Mo_IGKV4-81*01	91.0	Mo_IGKV4-81*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022