PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JYL

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	76.9	H1	13	H1-13-1	7	KASGYSFTAYNMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	30.0	H2	10	H2-10-1	10	FIDPYSGIIT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	100.0	H3	12	H3-12-*	-1	ARRGYYDGGFDY	BBBABAAEEBAB
B	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	100.0	H4	8	H4-8-1	8	VDKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	90.9	L1	11	L1-11-2	8	RASQDITNYLN	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	100.0	L2	8	L2-8-1	6	YYTSRLHS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	100.0	L3	9	L3-9-cis7-1	7	QQDSKHPRT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	100.0	L4	6	L4-6-1	8	GSGTDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	76.9	H1	13	H1-13-1	8	KASGYSFTAYNMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	30.0	H2	10	H2-10-1	10	FIDPYSGIIT	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	100.0	H3	12	H3-12-*	-1	ARRGYYDGGFDY	BBBABAAEEBAB
D	heavy	Mus.musculus	Mo_IGHV1S45*01	94.5	Mo_IGHV1S45*01	100.0	H4	8	H4-8-1	7	VDKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	90.9	L1	11	L1-11-2	7	RASQDITNYLN	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	100.0	L2	8	L2-8-1	5	YYTSRLHS	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	100.0	L3	9	L3-9-cis7-1	7	QQDSKHPRT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV10-96*03	100.0	Mo_IGKV10-96*03	100.0	L4	6	L4-6-1	7	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022