PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JXE

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	86.7	L1	15	L1-15-1	11	RASKGVStsgySYLH	BBABBABBLLBBBBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	14	YLASYLES	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	28.6	L3	9	L3-9-cis7-1	15	QHSRDLPLT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	92.3	H1	13	H1-13-1	8	KASGYTFTNYYMY	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	100.0	H2	10	H2-10-1	10	GINPSNGGTN	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	100.0	H3	13	H3-13-*	-1	ARRDYRFDMGFDY	BBBBAABBAEBAB
D	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	12	TDSSTTTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	86.7	L1	15	L1-15-1	12	RASKGVStsgySYLH	BBABBABBLLBBBBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	14	YLASYLES	BLEABBBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	28.6	L3	9	L3-9-cis7-1	12	QHSRDLPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	92.3	H1	13	H1-13-1	10	KASGYTFTNYYMY	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	100.0	H2	10	H2-10-1	11	GINPSNGGTN	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	100.0	H3	13	H3-13-*	-1	ARRDYRFDMGFDY	BBBBAABBAEBAB
G	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	TDSSTTTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022