PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JQD

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	83.3	L1	12	L1-12-*	-1	RASQSLSsKYLA	BBABBBBABLBB
A	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	87.5	L2	8	L2-8-1	11	YGASSRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-cis7-1	21	QQYDGVPRT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	83.3	L1	12	L1-12-*	-1	RASQSLSsKYLA	BBABBBBbLBBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	87.5	L2	8	L2-8-4	12	YGASSRAT	BEAABBBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-cis7-1	10	QQYDGVPRT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	CDRLenMismatch	-1.0	H1	16	H1-16-*	-1	RASGgtggTFSAYAFT
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	70.0	H2	10	H2-10-1	18	GITGMFGTAN	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	100.0	H3	13	H3-13-*	-1	ARGLYYYESSLDY	BBBABABBBBBAB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	14	ADELTSTA	BBAAALBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	CDRLenMismatch	-1.0	H1	16	H1-16-*	-1	RASGgtgGTFSAYAFT
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	70.0	H2	10	H2-10-1	18	GITGMFGTAN	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	100.0	H3	13	H3-13-*	-1	ARGLYYYESSLDY	BBBABABBBBBAB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	11	ADELTSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022