PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JQ6

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV2-6-4*01	90.4	Mo_IGHV2-6-4*01	92.3	H1	13	H1-13-1	9	TISGFSLSRYSVH	BBBLBBAAABBBB
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV2-6-4*01	90.4	Mo_IGHV2-6-4*01	88.9	H2	9	H2-9-1	10	MIWGGGNTD	BBBAALBBB
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV2-6-4*01	90.4	Mo_IGHV2-6-4*01	100.0	H3	15	H3-15-*	-1	ARKGEFYyGYDGFVY
H	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV2-6-4*01	90.4	Mo_IGHV2-6-4*01	87.5	H4	8	H4-8-1	12	KDNSKNQV	BBAAALBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV8-27*01	89.9	Mo_IGKV8-27*01	100.0	L1	17	L1-17-1	6	KSSQSVlyssnqKNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV8-27*01	89.9	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLEABBBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV8-27*01	89.9	Mo_IGKV8-27*01	100.0	L3	8	L3-8-1	11	HQYLSSYT	BBAABEBB
L	kappa	Mus.musculus.Homo.sapiens	Mo_IGKV8-27*01	89.9	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022