PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5IFJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	5	AASGFTFSTYAMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	8	GISGSGGSTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H3	16	H3-16-*	-1	AKFSGkdCSGTSCRDY
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L1	12	L1-12-*	-1	TLSSGHSSYVIA	BBBBLAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L2	12	L2-12-*	-1	KVNsdgsHSKGD	BBBAAEEBBBBB
B	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	85.7	L3	9	L3-9-3	20	QTWGAGILV	BBBBAABBB
B	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	100.0	L4	6	L4-6-2	11	SSGAER	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	5	AASGFTFSTYAMS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	8	GISGSGGSTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H3	16	H3-16-*	-1	AKFSGkdCSGTSCRDY
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L1	12	L1-12-*	-1	TLSSGHSSYVIA	BBBBLAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L2	12	L2-12-*	-1	KVNsdgsHSKGD	BBBAAEEBBBBB
E	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	85.7	L3	9	L3-9-3	20	QTWGAGILV	BBBBAABBB
E	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	100.0	L4	6	L4-6-2	11	SSGAER	BBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	5	AASGFTFSTYAMS	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	8	GISGSGGSTY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H3	16	H3-16-*	-1	AKFSGkdCSGTSCRDY
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
H	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L1	12	L1-12-*	-1	TLSSGHSSYVIA	BBBBLAAABBBB
H	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L2	12	L2-12-*	-1	KVNsdgsHSKGD	BBBAAEEBBBBB
H	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	85.7	L3	9	L3-9-3	20	QTWGAGILV	BBBBAABBB
H	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	100.0	L4	6	L4-6-2	11	SSGAER	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	5	AASGFTFSTYAMS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	8	GISGSGGSTY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H3	16	H3-16-*	-1	AKFSGkdCSGTSCRDY
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
K	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L1	12	L1-12-*	-1	TLSSGHSSYVIA	BBBBLAAABBBB
K	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	L2	12	L2-12-*	-1	KVNsdgsHSKGD	BBBAAEEBBBBB
K	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	85.7	L3	9	L3-9-3	20	QTWGAGILV	BBBBAABBB
K	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	100.0	L4	6	L4-6-2	11	SSGAER	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022