PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5I1D

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L1	17	L1-17-1	7	KSSQSVlyssnnKNYLA	BBABBABBAAALBBBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	6	YWASTRES	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L3	9	L3-9-cis7-1	8	QQYYSTPLT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	13	AASGFTFSSYAMS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	22	AISGSGGSTY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	12	H3-12-*	-1	AKYDgiyGELDF
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	10	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	12	H3-12-1	21	AKYDGIYGELDF	BBBBAAALBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L1	17	L1-17-1	8	KSSQSVlyssnnKNYLA	BBABBABBAAALBBBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L3	9	L3-9-cis7-1	8	QQYYSTPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022