PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5HBV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Rattus.norvegicus	Ra_IGKV22S9*01	88.4	Ra_IGKV22S9*01	63.6	L1	11	L1-11-2	11	KGSQNIDNYLA	BBABBALLBBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S9*01	88.4	Ra_IGKV22S9*01	100.0	L2	8	L2-8-1	8	YKTNSLQT	BLEABBBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S9*01	88.4	Ra_IGKV22S9*01	28.6	L3	8	L3-8-1	17	YQYINGYT	BBAABEBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S9*01	88.4	Ra_IGKV22S9*01	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	90.4	Ra_IGHV2-63*01	84.6	H1	13	H1-13-1	15	TVSGFSLTSYSVS	BBBLBBAAABBBB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	90.4	Ra_IGHV2-63*01	44.4	H2	9	H2-9-1	17	RMWDDGGTV	BBBAALBBB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	90.4	Ra_IGHV2-63*01	100.0	H3	14	H3-14-*	-1	TRDERIRAINWFAY	BBBBBBEABBBBAB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	90.4	Ra_IGHV2-63*01	100.0	H4	8	H4-8-1	11	RDTSKNQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022