PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GZO

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H1	14	H1-14-2	12	AVSGGSISsSNWWS	BBBLEBAABBBBBB
C	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H2	9	H2-9-1	12	EIYHSGSTN	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H3	12	H3-12-*	-1	ARDRDDLSPFDY	BBBBAALBBLAB
C	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H4	8	H4-8-1	14	VDKSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L1	11	L1-11-1	9	RASQGIRNDLG	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	AALABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L3	9	L3-9-cis7-1	9	LQHNSYPRT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L4	6	L4-6-1	6	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H1	14	H1-14-2	13	AVSGGSISsSNWWS	BBBLBBAABBBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H2	9	H2-9-1	11	EIYHSGSTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H3	12	H3-12-*	-1	ARDRDDLSPFDY	BBBBAALBBBAB
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	100.0	Hu_IGHV4-4*02	100.0	H4	8	H4-8-1	14	VDKSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L1	11	L1-11-1	6	RASQGIRNDLG	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	AALABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L3	9	L3-9-cis7-1	10	LQHNSYPRT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L4	6	L4-6-1	9	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022