PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GS3

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	53.8	H1	13	H1-13-1	8	AASGFTFRNSAMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	SIWYsgSNTY
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H3	12	H3-12-1	11	ARFAGGWGAYDV	BBBBAAALBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RASQSIGLYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	28.6	L3	9	L3-9-*	-1	QQGNTLSYT	BBAABAALB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	6	RASQSIGLYLA	BBABBAEABBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	28.6	L3	9	L3-9-2	11	QQGNTLSYT	BBAABABBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	53.8	H1	13	H1-13-1	8	AASGFTFRNSAMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	SIWYsgSNTY
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H3	12	H3-12-1	12	ARFAGGWGAYDV	BBBBAAALBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022