PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GMQ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV1-69*04	95.8	Hu_IGHV1-69*04	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*04	95.8	Hu_IGHV1-69*04	100.0	H2	10	H2-10-*	-1	RIIPILGIAN	BBBAAAEBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*04	95.8	Hu_IGHV1-69*04	50.0	H3	17	H3-17-*	-1	ASKQGDyydRTSYAFDI
B	heavy	Homo.sapiens	Hu_IGHV1-69*04	95.8	Hu_IGHV1-69*04	100.0	H4	8	H4-8-1	10	ADKSTSTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	10	RASQSVSsSYLA	BBABBBBAAABB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L2	8	L2-8-*	-1	YGASSRAT	BBaABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	10	QQYGSSPIT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022