PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GJT

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	97.3	Hu_IGHV4-4*07	76.9	H1	13	H1-13-1	13	SVSGASISSYYWI	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	97.3	Hu_IGHV4-4*07	77.8	H2	9	H2-9-*	-1	RFYTSGSPN	BBBABbLBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	97.3	Hu_IGHV4-4*07	100.0	H3	15	H3-15-*	-1	AREEHITFgGVIVRY
H	heavy	Homo.sapiens	Hu_IGHV4-4*07	97.3	Hu_IGHV4-4*07	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	94.2	Hu_IGKV1-5*03	100.0	L1	11	L1-11-1	6	RASQSISSWLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	94.2	Hu_IGKV1-5*03	100.0	L2	8	L2-8-1	10	YKASSLES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	94.2	Hu_IGKV1-5*03	85.7	L3	9	L3-9-cis7-1	9	QQYNSYPWT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	94.2	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	17	GSGSEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022