PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GIR

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	92.3	H1	13	H1-13-1	8	KASGYTFTSYWMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	90.0	H2	10	H2-10-1	9	MIHPSDGETR	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	0.0	H3	6	H3-6-*	-1	TTHFDY	BAALAB
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	87.5	H4	8	H4-8-1	9	LDKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	90.9	L1	11	L1-11-1	9	RASQRISNNLH	BBABBAEABBB
B	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	75.0	L2	8	L2-8-1	15	RYTSQSIS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	7	QQSNSWPFT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	92.3	H1	13	H1-13-1	8	KASGYTFTSYWMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	90.0	H2	10	H2-10-1	10	MIHPSDGETR	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	0.0	H3	6	H3-6-*	-1	TTHFDY	BAALAB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	87.5	H4	8	H4-8-1	7	LDKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	90.9	L1	11	L1-11-1	6	RASQRISNNLH	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	75.0	L2	8	L2-8-1	13	RYTSQSIS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	6	QQSNSWPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L4	6	L4-6-1	26	GSGTDF	EBLABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022