PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GGS

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	92.3	H1	13	H1-13-*	-1	KASGYTFTNYYMY	BBBAAAAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	100.0	H2	10	H2-10-1	13	GINPSNGGTN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	100.0	H3	13	H3-13-*	-1	ARRDYRFDMGFDY	BBBBAABBAEBAB
A	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	TDSSTTTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	86.7	L1	15	L1-15-1	8	RASKGVStsgySYLH	BBABBABBLLBBBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	6	YLASYLES	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	28.6	L3	9	L3-9-cis7-1	13	QHSRDLPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	92.3	H1	13	H1-13-1	9	KASGYTFTNYYMY	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Mo_IGHV1S120*02	100.0	H2	10	H2-10-1	12	GINPSNGGTN	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	100.0	H3	13	H3-13-*	-1	ARRDYRFDMGFDY	BBBBAABBAEBAB
C	heavy	Homo.sapiens	Hu_IGHV1-18*01	82.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	7	TDSSTTTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	86.7	L1	15	L1-15-1	7	RASKGVStsgySYLH	BBABBABBLLBBBBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	7	YLASYLES	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	28.6	L3	9	L3-9-cis7-1	12	QHSRDLPLT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022