PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GGR

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	69.2	H1	13	H1-13-1	17	KASGITFSNSGMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	80.0	H2	10	H2-10-2	14	VIWYDGSKRY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	50.0	H3	6	H3-6-*	-1	ATNDDY	BBAALB
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-1	23	RASQSVSSYLA	BBABBAEAABB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	21	YDASNRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	85.7	L3	9	L3-9-cis7-1	19	QQSSNWPRT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	69.2	H1	13	H1-13-1	16	KASGITFSNSGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	80.0	H2	10	H2-10-*	-1	VIWYDGSKRY	BBBAAEEBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	50.0	H3	6	H3-6-*	-1	ATNDDY	BBAALB
H	heavy	Homo.sapiens	Hu_IGHV3-33*03	97.3	Hu_IGHV3-33*03	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-1	15	RASQSVSSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-*	-1	YDASNRAT	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	85.7	L3	9	L3-9-cis7-1	14	QQSSNWPRT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022