PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5F6J

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	64.3	L1	14	L1-14-2	13	TGTSSDIGAYTgVS	BBBAAAAAABAABB
A	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L2	8	L2-8-1	13	YDVSKRPS	BLEABBBB
A	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	66.7	L3	10	L3-10-*	-1	CSYRTGATYI	BBBBBLLBBB
A	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L4	6	L4-6-2	10	KSGNTA	BBEABB
B	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	69.2	H1	13	H1-13-4	11	AASGFTFSNSGMI	BBBLBBABLBBBB
B	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	40.0	H2	10	H2-10-*	-1	YISLSGANTY	BBBAAELBBB
B	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	100.0	H3	10	H3-10-*	-1	AKEGWSYFDF	BBBABLBBBE
B	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	62.5	H4	8	H4-8-1	16	RDNSQNTL	BBAAALBB
F	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	64.3	L1	14	L1-14-2	13	TGTSSDIGAYTgVS	BBBAAAAAABAABB
F	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L2	8	L2-8-1	13	YDVSKRPS	BLEABBBB
F	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	66.7	L3	10	L3-10-*	-1	CSYRTGATYI	BBBBBLLBBB
F	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L4	6	L4-6-2	11	KSGNTA	BBEABB
H	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	69.2	H1	13	H1-13-4	11	AASGFTFSNSGMI	BBBLBBABLBBBB
H	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	40.0	H2	10	H2-10-*	-1	YISLSGANTY	BBBAAELBBB
H	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	100.0	H3	10	H3-10-*	-1	AKEGWSYFDF	BBBABLBBBE
H	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	62.5	H4	8	H4-8-1	16	RDNSQNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022