PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5F6H

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	69.2	H1	13	H1-13-4	10	AASGFTFSNSGMI	BBBLBBABLBBBB
I	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	40.0	H2	10	H2-10-*	-1	YISLSGANTY	BBBAAELBBB
I	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	100.0	H3	10	H3-10-*	-1	AKEGWSYFDF	BBBABLBBBE
I	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	62.5	H4	8	H4-8-1	17	RDNSQNTL	BBAAALBB
J	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	64.3	L1	14	L1-14-2	10	TGTSSDIGAYTgVS	BBBAAAAAABAABB
J	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L2	8	L2-8-1	11	YDVSKRPS	BLLABBBB
J	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	66.7	L3	10	L3-10-*	-1	CSYRTGATYI	BBBBBLLBBB
J	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB
K	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	69.2	H1	13	H1-13-4	18	AASGFTFSNSGMI	BBBLBBABLBBBB
K	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	40.0	H2	10	H2-10-2	12	YISLSGANTY	BBBAALABBB
K	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	100.0	H3	10	H3-10-*	-1	AKEGWSYFDF	BBBABLBBBE
K	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	62.5	H4	8	H4-8-1	17	RDNSQNTL	BBAAALBB
L	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	64.3	L1	14	L1-14-2	10	TGTSSDIGAYTgVS	BBBAAAAAABAABB
L	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L2	8	L2-8-1	11	YDVSKRPS	BLEABBBB
L	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	66.7	L3	10	L3-10-1	13	CSYRTGATYI	BBBBAALBBB
L	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB
M	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	69.2	H1	13	H1-13-4	10	AASGFTFSNSGMI	BBBLBBABLBBBB
M	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	40.0	H2	10	H2-10-2	15	YISLSGANTY	BBBAALABBB
M	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	100.0	H3	10	H3-10-*	-1	AKEGWSYFDF	BBBABLBBBE
M	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	62.5	H4	8	H4-8-1	17	RDNSQNTL	BBAAALBB
N	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	64.3	L1	14	L1-14-2	10	TGTSSDIGAYTgVS	BBBAAAAAABAABB
N	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L2	8	L2-8-1	11	YDVSKRPS	BLEABBBB
N	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	66.7	L3	10	L3-10-*	-1	CSYRTGATYI	BBBBAALBBB
N	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB
O	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	69.2	H1	13	H1-13-1	8	AASGFTFSNSGMI	BBBLBBAAABBBB
O	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	40.0	H2	10	H2-10-2	19	YISLSGANTY	BBBAALABBB
O	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	100.0	H3	10	H3-10-*	-1	AKEGWSYFDF	BBBABLBBBE
O	heavy	Macaca.mulatta	Ma_IGHV3-9*01	89.0	Ma_IGHV3-9*01	62.5	H4	8	H4-8-1	17	RDNSQNTL	BBAAALBB
P	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	64.3	L1	14	L1-14-2	10	TGTSSDIGAYTgVS	BBBAAAAAABAABB
P	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L2	8	L2-8-1	11	YDVSKRPS	BLEABBBB
P	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	66.7	L3	10	L3-10-*	-1	CSYRTGATYI	BBBBBLLBBB
P	lambda	Macaca.mulatta	Ma_IGLV2S9*01	94.1	Ma_IGLV2S9*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022