PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5F3J

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	92.3	H1	13	H1-13-*	-1	KASGYAFISSWMN	BBABAAAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	90.0	H2	10	H2-10-1	10	RIYPGDGDTH	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H3	13	H3-13-*	-1	AREETAqTGGFDY
C	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H4	8	H4-8-1	17	ADKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	93.8	L1	16	L1-16-*	-1	RSSKSLlyqdgKTYLN	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L2	8	L2-8-*	-1	YLMSTRAS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L3	9	L3-9-cis7-1	15	QQLVEYPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L4	6	L4-6-*	-1	GSGTDF	BALABB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	92.3	H1	13	H1-13-*	-1	KASGYAFISSWMN	BBABAAAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	90.0	H2	10	H2-10-1	10	RIYPGDGDTH	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H3	13	H3-13-*	-1	AREETAQTGGFDY	BBBBABAALBBAB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	100.0	Mo_IGHV1-82*01	100.0	H4	8	H4-8-1	17	ADKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	93.8	L1	16	L1-16-*	-1	RSSKSLlyqdgKTYLN	BBABBABBAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L2	8	L2-8-*	-1	YLMSTRAS	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L3	9	L3-9-cis7-1	14	QQLVEYPLT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EALABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022