PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5F3B

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	90.0	H2	10	H2-10-2	8	TISSGGSYTS	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H3	9	H3-9-*	-1	ARQDYAMNY	BBBBABBBL
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	4	RDNAKNTL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	4	KASQDVSTAVA	BBABBAEABBB
B	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	6	YSASYRYT	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L3	9	L3-9-cis7-1	9	QQHYSTPWT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H1	13	H1-13-1	8	AASGFTFSSYAMS	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	90.0	H2	10	H2-10-2	8	TISSGGSYTS	BBBAALABBB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H3	9	H3-9-*	-1	ARQDYAMNY	BBBBABBBL
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	4	KASQDVSTAVA	BBABBAEABBB
F	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	6	YSASYRYT	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L3	9	L3-9-cis7-1	9	QQHYSTPWT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022