PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5ESZ

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	38.5	H1	13	H1-13-1	12	KGSGFIFENFGFG	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	60.0	H2	10	H2-10-2	15	GTNWNGGDSR	EBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	100.0	H3	26	H3-26-*	-1	ARGTDYTiddqgiryqgsgTFWYFDV
A	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	50.0	H4	8	H4-8-1	8	RDNSNNFV	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	75.0	L1	12	L1-12-*	-1	RASqSvhSrYFA
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	75.0	L2	8	L2-8-1	16	YGGSTRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	100.0	L3	9	L3-9-cis7-1	10	QQYGRSPYT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	9	GSGTQF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	38.5	H1	13	H1-13-1	11	KGSGFIFENFGFG	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	60.0	H2	10	H2-10-2	13	GTNWNGGDSR	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	100.0	H3	26	H3-26-*	-1	ARGTDYTiddqgiryqgsgTFWYFDV
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	86.3	Hu_IGHV3-20*04	50.0	H4	8	H4-8-1	7	RDNSNNFV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	75.0	L1	12	L1-12-1	18	RASQSVHSrYFA	BBABBBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	75.0	L2	8	L2-8-1	12	YGGSTRAT	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	100.0	L3	9	L3-9-cis7-1	9	QQYGRSPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	85.5	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	8	GSGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022