PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5EPM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	76.9	H1	13	H1-13-1	8	KASGYTFTNFWMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	80.0	H2	10	H2-10-1	10	MIDPSDSETH	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	100.0	H3	12	H3-12-*	-1	ARRDYYGILFDY	BBBBAALABBAB
A	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	100.0	H4	8	H4-8-1	7	VDKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	7	RSSQSIvhnngNTYIE	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	6	YKVSNRFS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	13	FQGSHVPFT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	76.9	H1	13	H1-13-1	8	KASGYTFTNFWMN	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	80.0	H2	10	H2-10-1	8	MIDPSDSETH	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	100.0	H3	12	H3-12-*	-1	ARRDYYGILFDY	BBBBAALABBAB
E	heavy	Mus.musculus	Mo_IGHV1-61*01	93.2	Mo_IGHV1-61*01	100.0	H4	8	H4-8-1	6	VDKSSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	6	RSSQSIvhnngNTYIE	BBABBABBAALBBBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	3	YKVSNRFS	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	12	FQGSHVPFT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022