PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5EOC

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	92.3	H1	13	H1-13-*	-1	KASGYSFTTYWMN	BBBLBBAABEBBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	90.0	H2	10	H2-10-1	10	MIQPSDSETR	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	0.0	H3	12	H3-12-*	-1	ARTGRGDAWLTY	BBBABEABBBAB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	62.5	H4	8	H4-8-1	9	LDRSSSTV	BBAAALBB
J	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	84.6	H1	13	H1-13-*	-1	KASGYSFTTYWMM	BBBLBBAABEBBB
J	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	90.0	H2	10	H2-10-1	11	MIQPSDSETR	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	0.0	H3	12	H3-12-*	-1	ARTGRGDAWLTY	BBBABEAABBAB
J	heavy	Mus.musculus	Mo_IGHV1S82*01	91.8	Mo_IGHV1S82*01	62.5	H4	8	H4-8-1	11	LDRSSSTV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L1	15	L1-15-*	-1	RASKSVStsgySYMH	BBABBABBEABBBBB
L	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	7	YLGSNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-*	-1	QHIRELTRS	BBAABBLBB
L	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L1	15	L1-15-*	-1	RASKSVStsgySYMH	BBABBABBEABBBBB
M	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-*	-1	YLGSNLES	EbLABBBB
M	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	11	QHIRELTRS	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022