PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5DO2

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYTMS	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H2	10	H2-10-*	-1	TISSGGSYTY	BBBAAbABBB
C	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H3	9	H3-9-*	-1	TRDGNDYDY	BBBEABBAB
C	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	8	RDNAKNTL	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	7	RASQDISNYLN	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	7	YYTSRLHS	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	7	QQGNTLPRT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	5	GSGTDY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYTMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H2	10	H2-10-2	14	TISSGGSYTY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H3	9	H3-9-*	-1	TRDGNDYDY	BBBEABBAB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	100.0	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	8	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	6	RASQDISNYLN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	7	YYTSRLHS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	7	QQGNTLPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	100.0	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	5	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022