PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5DLM

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	69.2	H1	13	H1-13-1	10	SASGFSLSTYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	77.8	H2	9	H2-9-1	8	SMSSGGSLY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	50.0	H3	9	H3-9-*	-1	VRGGYGTSY	BBBELLBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	50.0	H4	8	H4-8-1	11	RDTVKNIV	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	69.2	H1	13	H1-13-1	10	SASGFSLSTYAMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	77.8	H2	9	H2-9-1	9	SMSSGGSLY	BBBAALBBB
I	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	50.0	H3	9	H3-9-*	-1	VRGGYGTSY	BBBELLBBB
I	heavy	Mus.musculus	Mo_IGHV5-6-5*01	86.3	Mo_IGHV5-6-5*01	50.0	H4	8	H4-8-1	12	RDTVKNIV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	87.5	L1	16	L1-16-*	-1	RSSQSIvhsigDTYLE	BBABBBBBEABBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	7	FQGSHFPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	87.5	L1	16	L1-16-*	-1	RSSQSIvhsigDTYLE	BBABBBBBEABBBBBB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	6	FQGSHFPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L4	6	L4-6-2	13	GSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022