PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5D1X

#CDRs = 8; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV2-30*02	97.1	Hu_IGKV2-30*02	68.8	L1	16	L1-16-*	-1	SSAQSLvhsdgDSYLT	BBABBABBAALBALBB
A	kappa	Homo.sapiens	Hu_IGKV2-30*02	97.1	Hu_IGKV2-30*02	75.0	L2	8	L2-8-1	14	YKVSIRDA	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV2-30*02	97.1	Hu_IGKV2-30*02	85.7	L3	9	L3-9-cis7-1	14	MQATHWPYT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV2-30*02	97.1	Hu_IGKV2-30*02	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	74.0	Hu_IGHV1-69*17	53.8	H1	13	H1-13-1	15	KASGDTFNTHTYS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	74.0	Hu_IGHV1-69*17	50.0	H2	10	H2-10-1	18	GIMPIFAASK	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	74.0	Hu_IGHV1-69*17	100.0	H3	10	H3-10-*	-1	ARDGRGALQY	BBAEABBLAB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	74.0	Hu_IGHV1-69*17	62.5	H4	8	H4-8-1	9	ANKATRTA	BBAAALBB
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	Hu_IGHV3-73*01	69.2	H1	13	H1-13-*	-1	AASGLIFSDSTMH	BBABABABLBBBB
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	CDRLenMismatch	-1.0	H2	19	H2-19-*	-1	RIRSKannyatssdKSATA
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	Hu_IGHV3-73*01	0.0	H3	16	H3-16-*	-1	IASSTTgwYVREDFDY
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	Hu_IGHV3-73*01	75.0	H4	8	H4-8-*	-1	RDDSKDTT	BBAABBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	94.2	Hu_IGKV3D-20*02	100.0	L1	12	L1-12-1	16	RASQSVSsSYLA	BBABBBBAAABB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	94.2	Hu_IGKV3D-20*02	87.5	L2	8	L2-8-4	13	YGASSRAT	BEAABBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	94.2	Hu_IGKV3D-20*02	0.0	L3	10	L3-10-*	-1	LHYGTSPmYF	BBBLABBBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	94.2	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022