PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5D1Q

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-12*01	97.1	Hu_IGKV1-12*01	72.7	L1	11	L1-11-1	13	RASQDISNWVA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-12*01	97.1	Hu_IGKV1-12*01	87.5	L2	8	L2-8-*	-1	YSASSLQS	BLEABBBA
A	kappa	Homo.sapiens	Hu_IGKV1-12*01	97.1	Hu_IGKV1-12*01	85.7	L3	9	L3-9-cis7-1	9	QQANTFPWT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-12*01	97.1	Hu_IGKV1-12*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	93.2	Hu_IGHV1-69*17	61.5	H1	13	H1-13-*	-1	QASGGSFSTRTIS	BBABEBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	93.2	Hu_IGHV1-69*17	80.0	H2	10	H2-10-*	-1	GISPIFGAAN	BBBAABABBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	93.2	Hu_IGHV1-69*17	100.0	H3	12	H3-12-*	-1	ARDRPPGAQFDT	BBBBBaELBBAB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	93.2	Hu_IGHV1-69*17	100.0	H4	8	H4-8-1	21	ADKSTSTA	BBAAALBB
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	Hu_IGHV3-73*01	69.2	H1	13	H1-13-1	20	AASGLIFSDSTMH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	CDRLenMismatch	-1.0	H2	19	H2-19-*	-1	RIRSKannyatssdKSATA
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	Hu_IGHV3-73*01	0.0	H3	16	H3-16-*	-1	IASSTTgwYVREDFDY
C	heavy	Homo.sapiens	Hu_IGHV3-73*01	86.3	Hu_IGHV3-73*01	75.0	H4	8	H4-8-1	12	RDDSKDTT	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	100.0	L1	12	L1-12-1	13	RASQSVSsSYLA	BBABBBBAAABB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	87.5	L2	8	L2-8-1	9	YGASSRAT	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	0.0	L3	10	L3-10-*	-1	LHYGTSPmYT	BBBLABBBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	97.1	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022