PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5CUS

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	9	AASGFTFSYYYMQ	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-2	21	YIGSSGGVTN	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	11	H3-11-*	-1	ARVGLGDAFDI	BBBBBLLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	7	AASGFTFSYYYMQ	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-2	18	YIGSSGGVTN	BBBAALABBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	11	H3-11-*	-1	ARVGLGDAFDI	BBBBBLLBBAB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	10	AASGFTFSYYYMQ	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-2	17	YIGSSGGVTN	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	11	H3-11-*	-1	ARVGLGDAFDI	BBBBBLLBBAB
J	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	8	AASGFTFSYYYMQ	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-2	20	YIGSSGGVTN	BBBAALABBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	11	H3-11-*	-1	ARVGLGDAFDI	BBBBBLLBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	76.9	L1	13	L1-13-1	12	SGSLSNIGLNYVS	BBBAAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	87.5	L2	8	L2-8-1	14	SRNNQRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	77.8	L3	11	L3-11-*	-1	AAWDDSPPGEA	BBBBAABBEBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	100.0	L4	6	L4-6-2	17	KSGTSA	BBEABB
M	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	76.9	L1	13	L1-13-*	-1	SGSLSNIGLNYVS	BBBAAAABLBBBB
M	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	87.5	L2	8	L2-8-1	17	SRNNQRPS	BLEABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	77.8	L3	11	L3-11-*	-1	AAWDDSPPGEA	BBBBAABBBBB
M	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	100.0	L4	6	L4-6-2	18	KSGTSA	BBEABB
N	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	76.9	L1	13	L1-13-*	-1	SGSLSNIGLNYVS	BBBAAAABLBBBB
N	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	87.5	L2	8	L2-8-1	18	SRNNQRPS	BLEABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	77.8	L3	11	L3-11-*	-1	AAWDDSPPGEA	BBBBAABBBBB
N	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	100.0	L4	6	L4-6-2	10	KSGTSA	BBEABB
O	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	76.9	L1	13	L1-13-*	-1	SGSLSNIGLNYVS	BBBAAAABLBBBB
O	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	87.5	L2	8	L2-8-1	15	SRNNQRPS	BLEABBBB
O	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	77.8	L3	11	L3-11-*	-1	AAWDDSPPGEA	BBBBAABBBBB
O	lambda	Homo.sapiens	Hu_IGLV1-47*01	100.0	Hu_IGLV1-47*01	100.0	L4	6	L4-6-2	13	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022