PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5CSZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	10	AASGFTFSSYAMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	60.0	H2	10	H2-10-2	10	AINASGTRTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	50.0	H3	19	H3-19-*	-1	ARGKGnthkpygYVRYFDV
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	2	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	100.0	L1	12	L1-12-1	7	RASQSVSsSYLA	BBABBBBAAABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	100.0	L2	8	L2-8-1	4	YGASSRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	0.0	L3	9	L3-9-cis7-1	7	LQIYNMPIT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	10	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	60.0	H2	10	H2-10-2	8	AINASGTRTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	50.0	H3	19	H3-19-*	-1	ARGKGnthkpygYVRYFDV
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	97.3	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	100.0	L1	12	L1-12-1	7	RASQSVSsSYLA	BBABBBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	100.0	L2	8	L2-8-1	4	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	0.0	L3	9	L3-9-cis7-1	6	LQIYNMPIT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	94.2	Hu_IGKV3-20*02	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022