PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5CMA

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L1	11	L1-11-1	18	RASQSISDYLH	BBABBAEABBB
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L2	8	L2-8-1	21	KYASQSIS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L3	9	L3-9-cis7-1	16	QNGHSFPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L4	6	L4-6-1	16	GSGSDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-85*01	90.4	Mo_IGHV1-85*01	92.3	H1	13	H1-13-1	13	KASGYTFTNYDIN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-85*01	90.4	Mo_IGHV1-85*01	70.0	H2	10	H2-10-1	14	WIFPGDGSTQ	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-85*01	90.4	Mo_IGHV1-85*01	100.0	H3	11	H3-11-*	-1	ARQTTATWFAY	BBBAABABBAB
B	heavy	Mus.musculus	Mo_IGHV1-85*01	90.4	Mo_IGHV1-85*01	87.5	H4	8	H4-8-1	12	TDTSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022