PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5CGY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	76.9	H1	13	H1-13-1	9	KASGYSFTSYSIN	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	90.0	H2	10	H2-10-1	15	WIDTNTGNPT	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	50.0	H3	20	H3-20-*	-1	ATyyvdlwGSYRQDYYGMDV
C	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	87.5	H4	8	H4-8-1	9	LDTSVTTA	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	84.6	L1	13	L1-13-1	7	SGGSSNIGSNPVN	BBBAAAAAABBBB
D	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	8	YTNNQRPS	BLLABBBB
D	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AVWDDSLSgRWV
D	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	11	KSGTSA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	76.9	H1	13	H1-13-1	9	KASGYSFTSYSIN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	90.0	H2	10	H2-10-1	16	WIDTNTGNPT	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	50.0	H3	20	H3-20-*	-1	ATyyvdlwGSYRQDYYGMDV
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	87.5	H4	8	H4-8-1	9	LDTSVTTA	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	84.6	L1	13	L1-13-1	7	SGGSSNIGSNPVN	BBBAAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	8	YTNNQRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AVWDDSLSgRWV
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	89.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	7	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022