PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5C8J

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	19	AASGFNFSSSSIH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	60.0	H2	10	H2-10-3	11	SISPSYGYTY	BBBBEALBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	21	H3-21-*	-1	ARGIWSYwymvyphDNYGMDY
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABBBBABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	8	YSASSLYS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	16	QQSSSRPVT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	17	RSGTDF	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	19	AASGFNFSSSSIH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	60.0	H2	10	H2-10-3	12	SISPSYGYTY	BBBBEALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	21	H3-21-*	-1	ARGIWSYwymvyphDNYGMDY
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABBBBABBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	8	YSASSLYS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	15	QQSSSRPVT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	16	RSGTDF	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	20	AASGFNFSSSSIH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	60.0	H2	10	H2-10-3	14	SISPSYGYTY	BBBBLALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	21	H3-21-*	-1	ARGIWSYwymvyphDNYGMDY
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABBBBABBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	8	YSASSLYS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	14	QQSSSRPVT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	16	RSGTDF	BBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	19	AASGFNFSSSSIH	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	60.0	H2	10	H2-10-3	16	SISPSYGYTY	BBBBEALBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	21	H3-21-*	-1	ARGIWSYwymvyphDNYGMDY
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABBBBABBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	8	YSASSLYS	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	16	QQSSSRPVT	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	16	RSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022