PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5BVJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L1	11	L1-11-1	5	RASQSIGSSLH	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	87.5	L2	8	L2-8-1	8	KYASQSFS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L3	9	L3-9-cis7-1	6	HQSSSLPFT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	8	AASGFTFSVYGMN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70.0	H2	10	H2-10-2	9	IIWYDGDNQY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	11	H3-11-*	-1	ARDLRTGPFDY	BBBBLLBBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L1	11	L1-11-1	4	RASQSIGSSLH	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	87.5	L2	8	L2-8-1	11	KYASQSFS	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L3	9	L3-9-cis7-1	7	HQSSSLPFT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	9	AASGFTFSVYGMN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70.0	H2	10	H2-10-2	9	IIWYDGDNQY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	11	H3-11-*	-1	ARDLRTGPFDY	BBBBLLBBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L1	11	L1-11-1	4	RASQSIGSSLH	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	87.5	L2	8	L2-8-1	9	KYASQSFS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L3	9	L3-9-cis7-1	8	HQSSSLPFT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	8	AASGFTFSVYGMN	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70.0	H2	10	H2-10-2	8	IIWYDGDNQY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	11	H3-11-*	-1	ARDLRTGPFDY	BBBBLLBBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	12	RDNSKNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L1	11	L1-11-1	4	RASQSIGSSLH	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	87.5	L2	8	L2-8-1	7	KYASQSFS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L3	9	L3-9-cis7-1	7	HQSSSLPFT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV6D-21*02	100.0	Hu_IGKV6D-21*02	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	9	AASGFTFSVYGMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70.0	H2	10	H2-10-2	7	IIWYDGDNQY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	11	H3-11-*	-1	ARDLRTGPFDY	BBBBBLBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022