PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5BK5

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L1	16	L1-16-*	-1	RSSQSLlhsngYNYLD	BBABBABBABABBBBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	7	YLGSNRAS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	9	MQALQTPYT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H1	13	H1-13-*	-1	AASGFtFSSYAMS
B	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H2	10	H2-10-*	-1	VIYSGGSSTY	BBBABEBBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	0.0	H3	14	H3-14-*	-1	TTLLILESDVGVDY	BAEBBBBEABBBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L1	16	L1-16-1	16	RSSQSLlhsngYNYLD	BBABBABBAALBBBBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	6	YLGSNRAS	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	9	MQALQTPYT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H1	13	H1-13-1	19	AASGFTFSSYAMS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H2	10	H2-10-2	14	VIYSGGSSTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	0.0	H3	14	H3-14-*	-1	TTLLILESDVGVDY	BAEBBBBLLBBBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L1	16	L1-16-*	-1	RSSQSLlhsngYNYLD
E	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	6	YLGSNRAS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	9	MQALQTPYT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H1	13	H1-13-*	-1	AASGfTFSSYAMS
F	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H2	10	H2-10-*	-1	VIYSGGSSTY	BBBABEBBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	0.0	H3	14	H3-14-*	-1	TTLLILESDVGVDY	BAEBBBBEABBBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L1	16	L1-16-*	-1	RSSQSLlhsngYNYLD	BBABBABBABABBBBB
G	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	6	YLGSNRAS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	9	MQALQTPYT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H1	13	H1-13-*	-1	AASgftFSSYAMS
H	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H2	10	H2-10-6	16	VIYSGGSSTY	BBBABLLBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	0.0	H3	14	H3-14-*	-1	TTLLILESDVGVDY	BAEBBBBLLBBBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*03	100.0	Hu_IGHV3-23*03	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022