PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5BK0

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Ra_IGKV3S13*01	26.7	L1	15	L1-15-*	-1	RSTQSLifgeHNYLD	BBABBABBEABBBBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Ra_IGKV3S13*01	75.0	L2	8	L2-8-1	7	YLASNRAS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Hu_IGKV2-28*01	42.9	L3	9	L3-9-cis7-1	8	VQTVQVPYT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Hu_IGKV2-28*01	83.3	L4	6	L4-6-1	5	GSGTYF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Ra_IGHV5-54*01	76.9	H1	13	H1-13-1	13	VVSGFTFSNYAFN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Ra_IGHV5-54*01	40.0	H2	10	H2-10-2	15	IIYRSGSRMY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Hu_IGHV3-23*05	0.0	H3	14	H3-14-*	-1	TTLLIYESDVGVDF	BAEBBBBLLBBBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Hu_IGHV3-23*05	87.5	H4	8	H4-8-1	6	RDDSKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	CDRLenMismatch	-1.0	L1	15	L1-15-*	-1	RSTQSLifgeHNYLD	BBABBABBEABBBBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Hu_IGKV2-28*01	87.5	L2	8	L2-8-*	-1	YLASNRAS	BLLABBBL
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Hu_IGKV2-28*01	42.9	L3	9	L3-9-cis7-1	8	VQTVQVPYT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	95.7	Hu_IGKV2-28*01	83.3	L4	6	L4-6-1	5	GSGTYF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Hu_IGHV3-23*05	61.5	H1	13	H1-13-1	13	VVSGFTFSNYAFN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Hu_IGHV3-23*05	60.0	H2	10	H2-10-2	15	IIYRSGSRMY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Hu_IGHV3-23*05	0.0	H3	14	H3-14-*	-1	TTLLIYESDVGVDF	BBBBBBBLLBBBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*05	91.8	Hu_IGHV3-23*05	87.5	H4	8	H4-8-1	6	RDDSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022