PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5B6F

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	6	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	71.4	L3	9	L3-9-cis7-1	9	SQSKYVPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	92.3	H1	13	H1-13-1	11	VASGFTISNYWMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	91.7	H2	12	H2-12-1	7	EIRlkSNNYVTH	BBBBAAALLBBB
B	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	50.0	H3	9	H3-9-*	-1	TPIYSPFAY	BBBLBAABB
B	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	87.5	H4	8	H4-8-1	8	RDDSKNSV	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	8	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	71.4	L3	9	L3-9-cis7-1	10	SQSKYVPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	92.3	H1	13	H1-13-1	15	VASGFTISNYWMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	91.7	H2	12	H2-12-1	9	EIRlkSNNYVTH	BBBBAAALLBBB
D	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	50.0	H3	9	H3-9-*	-1	TPIYSPFAY	BBBLBAABB
D	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	87.5	H4	8	H4-8-1	6	RDDSKNSV	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	6	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	8	YKVSNRFS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	71.4	L3	9	L3-9-cis7-1	10	SQSKYVPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	92.3	H1	13	H1-13-1	11	VASGFTISNYWMN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	91.7	H2	12	H2-12-1	8	EIRlkSNNYVTH	BBBBAAALLBBB
F	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	50.0	H3	9	H3-9-*	-1	TPIYSPFAY	BBBLBAABB
F	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	87.5	H4	8	H4-8-1	7	RDDSKNSV	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	5	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	8	YKVSNRFS	BLEABBBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	71.4	L3	9	L3-9-cis7-1	10	SQSKYVPYT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	92.3	H1	13	H1-13-1	16	VASGFTISNYWMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	91.7	H2	12	H2-12-1	8	EIRlkSNNYVTH	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	50.0	H3	9	H3-9-*	-1	TPIYSPFAY	BBBLBAABB
H	heavy	Mus.musculus	Mo_IGHV6-6*02	95.9	Mo_IGHV6-6*02	87.5	H4	8	H4-8-1	6	RDDSKNSV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022