PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5AAW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	None	-1.0	H1	12	H1-12-*	-1	KAGFNIKDVYMS
A	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	40.0	H2	10	H2-10-1	9	RIDPENGDTK	BBBAAALBBB
A	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARGWEGFAY	BBEABEBAB
A	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	ADTSTNTA	BBAAALBB
A	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	0.0	L1	15	L1-15-1	8	RASENVDKYgnsfMH	BBABBABBLLBBBBB
A	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	37.5	L2	8	L2-8-1	10	YRASELQW	BLEABBBB
A	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	28.6	L3	9	L3-9-cis7-1	23	QRSNEVPWT	BBAABBbBB
A	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
B	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	None	-1.0	H1	12	H1-12-*	-1	KAGFNIKDVYMS
B	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	40.0	H2	10	H2-10-1	9	RIDPENGDTK	BBBAAALBBB
B	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARGWEGFAY	BBEABEBAB
B	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	ADTSTNTA	BBAAALBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	0.0	L1	15	L1-15-1	8	RASENVDKYgnsfMH	BBABBABBLLBBBBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	37.5	L2	8	L2-8-1	10	YRASELQW	BLEABBBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	28.6	L3	9	L3-9-cis7-1	23	QRSNEVPWT	BBAABBbBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
D	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	None	-1.0	H1	12	H1-12-*	-1	KAGFNIKDVYMS
D	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	40.0	H2	10	H2-10-1	9	RIDPENGDTK	BBBAAALBBB
D	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARGWEGFAY	BBEABEBAB
D	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	ADTSTNTA	BBAAALBB
D	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	0.0	L1	15	L1-15-1	8	RASENVDKYgnsfMH	BBABBABBLLBBBBB
D	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	37.5	L2	8	L2-8-1	10	YRASELQW	BLEABBBB
D	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	28.6	L3	9	L3-9-cis7-1	23	QRSNEVPWT	BBAABBbBB
D	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
F	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	None	-1.0	H1	12	H1-12-*	-1	KAGFNIKDVYMS
F	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	40.0	H2	10	H2-10-1	9	RIDPENGDTK	BBBAAALBBB
F	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARGWEGFAY	BBEABEBAB
F	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	ADTSTNTA	BBAAALBB
F	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	0.0	L1	15	L1-15-1	8	RASENVDKYgnsfMH	BBABBABBLLBBBBB
F	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	37.5	L2	8	L2-8-1	10	YRASELQW	BLEABBBB
F	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	28.6	L3	9	L3-9-cis7-1	23	QRSNEVPWT	BBAABBbBB
F	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
H	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	None	-1.0	H1	12	H1-12-*	-1	KAGFNIKDVYMS
H	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	40.0	H2	10	H2-10-1	10	RIDPENGDTK	BBBAAALBBB
H	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARGWEGFAY	BBEABEBAB
H	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	ADTSTNTA	BBAAALBB
H	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	0.0	L1	15	L1-15-1	8	RASENVDKYgnsfMH	BBABBABBLLBBBBB
H	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	37.5	L2	8	L2-8-1	10	YRASELQW	BLEABBBB
H	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	28.6	L3	9	L3-9-cis7-1	23	QRSNEVPWT	BBAABBbBB
H	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
K	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	None	-1.0	H1	12	H1-12-*	-1	KAGFNIKDVYMS
K	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	40.0	H2	10	H2-10-1	10	RIDPENGDTK	BBBAAALBBB
K	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARGWEGFAY	BBEABEBAB
K	heavy	Mus.musculus	Hu_IGHV1-18*01	93.2	Hu_IGHV1-18*01	75.0	H4	8	H4-8-1	8	ADTSTNTA	BBAAALBB
K	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	0.0	L1	15	L1-15-1	7	RASENVDKYgnsfMH	BBABBABBLLBBBBB
K	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	None	37.5	L2	8	L2-8-1	10	YRASELQW	BLEABBBB
K	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	28.6	L3	9	L3-9-cis7-1	23	QRSNEVPWT	BBAABBbBB
K	kappa	Mus.musculus	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022