PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4ZXB

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	84.6	H1	13	H1-13-1	11	TVSGFPLTAYGVN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	10	MIWGDGNTD	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H3	12	H3-12-*	-1	ARDPYGSKPMDY	BBBBBLABBBAB
A	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	8	KDNSKSQV	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	7	KSSQSLlyssnqKNFLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	57.1	L3	8	L3-8-1	8	QQYFRYRT	BBAABEBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV1S33*01	97.0	Mo_IGHV1S33*01	84.6	H1	13	H1-13-1	12	KASGYTFTNYDIH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1S33*01	97.0	Mo_IGHV1S33*01	100.0	H2	10	H2-10-1	8	WIYPGDGSTK	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1S33*01	97.0	Mo_IGHV1S33*01	0.0	H3	6	H3-6-2	10	AREWAY	BBLLAB
C	heavy	Mus.musculus	Mo_IGHV1S33*01	97.0	Mo_IGHV1S33*01	100.0	H4	8	H4-8-1	6	ADKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV9-120*01	98.6	Mo_IGKV9-120*01	72.7	L1	11	L1-11-2	9	RASQDIGGNLY	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV9-120*01	98.6	Mo_IGKV9-120*01	100.0	L2	8	L2-8-1	5	YATSSLDS	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV9-120*01	98.6	Mo_IGKV9-120*01	85.7	L3	9	L3-9-2	17	LQYSSSPWT	BBAABABBB
D	kappa	Mus.musculus	Mo_IGKV9-120*01	98.6	Mo_IGKV9-120*01	100.0	L4	6	L4-6-2	11	RSGSDY	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022