PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4ZFO

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	100.0	H1	13	H1-13-1	9	AASGIDFSRYWMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	100.0	H2	10	H2-10-2	9	EINPDSSTIN	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	50.0	H3	13	H3-13-*	-1	ASLYYDYGDAMDY	BBBBBBLLBBBBB
A	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	72.7	L1	11	L1-11-1	5	KASQSVDSNVA	BBABBAEABBB
B	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	62.5	L2	8	L2-8-1	7	FSASLRFS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	85.7	L3	9	L3-9-cis7-1	8	QQYNNYPLT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	100.0	H1	13	H1-13-1	15	AASGIDFSRYWMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	100.0	H2	10	H2-10-2	12	EINPDSSTIN	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	50.0	H3	13	H3-13-*	-1	ASLYYDYGDAMDY	BBBBBBLLBBBBB
H	heavy	Mus.musculus	Mo_IGHV4-1*01	95.9	Mo_IGHV4-1*01	100.0	H4	8	H4-8-1	4	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	72.7	L1	11	L1-11-1	4	KASQSVDSNVA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	62.5	L2	8	L2-8-1	6	FSASLRFS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	85.7	L3	9	L3-9-cis7-1	4	QQYNNYPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	92.8	Mo_IGKV6-15*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022