PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4YZF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	16	SFSGFSLTTSgiGVG	BBBLBBAABBLBBBB
E	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H2	9	H2-9-1	15	HIWWSASKY	BBBAALBBB
E	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H3	15	H3-15-*	-1	ARAYYGNYgGYYFDY
E	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	87.5	H4	8	H4-8-1	12	KDTSNNQV	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	93.3	L1	15	L1-15-*	-1	RASQSVStssySYMN	BBABBABBAABBBBB
F	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L2	8	L2-8-1	6	KYASNLES	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L3	9	L3-9-cis7-1	9	QHSWEIPWT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
G	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	13	SFSGFSLTTSgiGVG	BBBLBBAABBLBBBB
G	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H2	9	H2-9-1	15	HIWWSASKY	BBBAALBBB
G	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H3	15	H3-15-*	-1	ARAYYGNYgGYYFDY
G	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	87.5	H4	8	H4-8-1	12	KDTSNNQV	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	93.3	L1	15	L1-15-*	-1	RASQSVStssySYMN	BBABBABBAABBBBB
H	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L2	8	L2-8-1	6	KYASNLES	BLLABBBB
H	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L3	9	L3-9-cis7-1	9	QHSWEIPWT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
I	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	16	SFSGFSLTTSgiGVG	BBBLBBAABBLBBBB
I	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H2	9	H2-9-1	15	HIWWSASKY	BBBAALBBB
I	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H3	15	H3-15-*	-1	ARAYYGNYgGYYFDY
I	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	87.5	H4	8	H4-8-1	12	KDTSNNQV	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	93.3	L1	15	L1-15-*	-1	RASQSVStssySYMN	BBABBABBAABBBBB
J	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L2	8	L2-8-1	5	KYASNLES	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L3	9	L3-9-cis7-1	9	QHSWEIPWT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
K	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	13	SFSGFSLTTSgiGVG	BBBLBBAABBLBBBB
K	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H2	9	H2-9-1	15	HIWWSASKY	BBBAALBBB
K	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	66.7	H3	15	H3-15-*	-1	ARAYYGNYgGYYFDY
K	heavy	Mus.musculus	Mo_IGHV8-8*01	90.4	Mo_IGHV8-8*01	87.5	H4	8	H4-8-1	12	KDTSNNQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	93.3	L1	15	L1-15-*	-1	RASQSVStssySYMN	BBABBABBAABBBBB
L	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L2	8	L2-8-1	6	KYASNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L3	9	L3-9-cis7-1	9	QHSWEIPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-7*01	97.1	Mo_IGKV3-7*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022