PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4YR6

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	CDRLenMismatch	-1.0	H1	13	H1-13-*	-1	SFSGFSLSTSNMG
A	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	Mo_IGHV8-5*02	66.7	H2	9	H2-9-1	11	HILWNDGKF	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	Mo_IGHV8-5*02	0.0	H3	14	H3-14-*	-1	ARLFTTTTSGYFDV	BBBBBBAABBBBAB
A	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	Mo_IGHV8-5*02	87.5	H4	8	H4-8-1	7	KDTYNNQV	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	90.9	L1	11	L1-11-2	8	RASGNIYNYLA	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	8	YNAKTLAD	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	85.7	L3	9	L3-9-cis7-*	-1	QHFWDTPWT	BBABBBbBB
B	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	9	GSGTQY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	CDRLenMismatch	-1.0	H1	13	H1-13-*	-1	SFSGFSLSTSNMG
D	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	Mo_IGHV8-5*02	66.7	H2	9	H2-9-1	10	HILWNDGKF	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	Mo_IGHV8-5*02	0.0	H3	14	H3-14-*	-1	ARLFTTTTSGYFDV	BBBBBBAABBBBAB
D	heavy	Mus.musculus	Mo_IGHV8-5*02	90.4	Mo_IGHV8-5*02	87.5	H4	8	H4-8-*	-1	KDTYNNQV	BBABLLBB
E	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	90.9	L1	11	L1-11-2	7	RASGNIYNYLA	BBABBALLBBB
E	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	9	YNAKTLAD	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	85.7	L3	9	L3-9-cis7-*	-1	QHFWDTPWT	BBABBBbBB
E	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	9	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022