PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4YPG

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	10	RASQSVSsTYLA	BBABBBBAAABB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	20	YGASSRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	9	L3-9-2	18	QQYGSSPRT	BBAABABBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	92.3	H1	13	H1-13-1	8	KASGYTFTSYSIS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	90.0	H2	10	H2-10-1	12	WISVYNGNTN	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARDPIAAGY	BBBbAAALB
B	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	100.0	H4	8	H4-8-1	9	TDTSTSTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	92.3	H1	13	H1-13-1	9	KASGYTFTSYSIS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	90.0	H2	10	H2-10-1	9	WISVYNGNTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	100.0	H3	9	H3-9-*	-1	ARDPIAAGY	BBBbAAALB
H	heavy	Homo.sapiens	Hu_IGHV1-18*01	97.3	Hu_IGHV1-18*01	100.0	H4	8	H4-8-1	18	TDTSTSTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	12	RASQSVSsTYLA	BBABBBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	19	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	9	L3-9-2	21	QQYGSSPRT	BBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022