PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4YHP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	76.9	H1	13	H1-13-1	7	TASGFTFRDYWMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	40.0	H2	10	H2-10-2	8	DINPDGITRY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	100.0	H3	14	H3-14-*	-1	AREFHSGLGWHFDL	BBBBBALABBBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	4	RDNAKSSL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	72.7	L1	11	L1-11-3	7	GGTNIGDISVH	BBBLAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L2	8	L2-8-1	10	YDDSDRPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	55.6	L3	11	L3-11-1	12	QVWDDSINAYV	BBBBAAALBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	76.9	H1	13	H1-13-1	6	TASGFTFRDYWMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	40.0	H2	10	H2-10-2	9	DINPDGITRY	BBBAALABBB
C	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	100.0	H3	14	H3-14-*	-1	AREFHSGLGWHFDL	BBBBBALABBBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	3	RDNAKSSL	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	72.7	L1	11	L1-11-3	7	GGTNIGDISVH	BBBLAAABBBB
D	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L2	8	L2-8-1	14	YDDSDRPS	BLEABBBB
D	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	55.6	L3	11	L3-11-1	14	QVWDDSINAYV	BBBBAAALBBB
D	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L4	6	L4-6-2	14	NSGNTA	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	76.9	H1	13	H1-13-1	8	TASGFTFRDYWMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	40.0	H2	10	H2-10-2	10	DINPDGITRY	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	100.0	H3	14	H3-14-*	-1	AREFHSGLGWHFDL	BBBBBALABBBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	3	RDNAKSSL	BBAAALBB
F	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	72.7	L1	11	L1-11-3	7	GGTNIGDISVH	BBBLAAABBBB
F	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L2	8	L2-8-1	11	YDDSDRPS	BLEABBBB
F	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	55.6	L3	11	L3-11-1	12	QVWDDSINAYV	BBBBAAALBBB
F	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L4	6	L4-6-2	17	NSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	76.9	H1	13	H1-13-1	6	TASGFTFRDYWMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	40.0	H2	10	H2-10-2	9	DINPDGITRY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	100.0	H3	14	H3-14-*	-1	AREFHSGLGWHFDL	BBBBBALABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	4	RDNAKSSL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	72.7	L1	11	L1-11-3	8	GGTNIGDISVH	BBBLAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L2	8	L2-8-1	13	YDDSDRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	55.6	L3	11	L3-11-1	15	QVWDDSINAYV	BBBBAAALBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*02	95.5	Hu_IGLV3-21*02	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022