PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4YDV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	64.7	L1	17	L1-17-*	-1	KSSQtllyssnnrHSIA
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	75.0	L2	8	L2-8-1	7	YWASMRLS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	57.1	L3	9	L3-9-cis7-1	20	HQYSSHPPT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	29	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	69.2	H1	13	H1-13-1	8	EASGFTFTEYYMT	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	40.0	H2	10	H2-10-2	7	YISKNGEYSK	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	100.0	H3	19	H3-19-*	-1	ARADGLTYfsellQYIFDL
B	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	87.5	H4	8	H4-8-1	5	RDNAKNSV	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	69.2	H1	13	H1-13-1	8	EASGFTFTEYYMT	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	40.0	H2	10	H2-10-2	7	YISKNGEYSK	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	100.0	H3	19	H3-19-*	-1	ARADGLTYfsellQYIFDL
H	heavy	Homo.sapiens	Hu_IGHV3-11*05	76.7	Hu_IGHV3-11*05	87.5	H4	8	H4-8-1	5	RDNAKNSV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	64.7	L1	17	L1-17-*	-1	KSSQtllyssnnrHSIA
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	75.0	L2	8	L2-8-1	7	YWASMRLS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	57.1	L3	9	L3-9-cis7-1	20	HQYSSHPPT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	87.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	30	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022