PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4YBQ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L1	16	L1-16-1	6	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	4	YKVSNRFS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	6	AASGFTFSSFGMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	70.0	H2	10	H2-10-2	7	HISSGSRTID	BBBAALABBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	100.0	H3	12	H3-12-1	14	ARGNGYYDALDY	BBBBAAALBBAB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	6	RDNPKNTL	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L1	16	L1-16-1	6	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	4	YKVSNRFS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	6	AASGFTFSSFGMH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	70.0	H2	10	H2-10-2	7	HISSGSRTID	BBBAALABBB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	100.0	H3	12	H3-12-1	14	ARGNGYYDALDY	BBBBAAALBBAB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	95.9	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	6	RDNPKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022