PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4Y5X

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	6	AISGSGGSTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	17	H3-17-*	-1	VKDRVAvagKGSYYFDS
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	92.3	L1	13	L1-13-1	14	SGSSSNIGNNAVS	BBBAAAAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	87.5	L2	8	L2-8-1	15	YYDNLLPS	BLEABBBB
B	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-*	-1	AAWDDSLNDWV	BBBBAABBBBB
B	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	17	KSGTSA	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	6	AISGSGGSTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	17	H3-17-*	-1	VKDRVAvagKGSYYFDS
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	92.3	L1	13	L1-13-1	14	SGSSSNIGNNAVS	BBBAAAAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	87.5	L2	8	L2-8-1	15	YYDNLLPS	BLEABBBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-*	-1	AAWDDSLNDWV	BBBBAABBBBB
E	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	17	KSGTSA	BBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	6	AISGSGGSTY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	17	H3-17-*	-1	VKDRVAvagKGSYYFDS
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	92.3	L1	13	L1-13-1	13	SGSSSNIGNNAVS	BBBAAAAAABBBB
H	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	87.5	L2	8	L2-8-1	15	YYDNLLPS	BLEABBBB
H	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-1	12	AAWDDSLNDWV	BBBBAAALBBB
H	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	17	KSGTSA	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	6	AISGSGGSTY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	17	H3-17-*	-1	VKDRVAvagKGSYYFDS
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
K	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	92.3	L1	13	L1-13-1	13	SGSSSNIGNNAVS	BBBAAAAAABBBB
K	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	87.5	L2	8	L2-8-1	15	YYDNLLPS	BLEABBBB
K	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	88.9	L3	11	L3-11-*	-1	AAWDDSLNDWV	BBBBAABBBBB
K	lambda	Homo.sapiens	Hu_IGLV1-36*01	95.6	Hu_IGLV1-36*01	100.0	L4	6	L4-6-2	17	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022