PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4XWO

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	15	SISPYSSSTS	BBBAAALBBB
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBlBAABABBAB
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	8	RASQSVSSAVA	BBABBAEABBB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	8	RSGTDF	BBEABB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	11	SISPYSSSTS	BBBAAALBBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBBBAABABBAB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	8	RASQSVSSAVA	BBABBAEABBB
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	3	YSASSLYS	BLLABBBB
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	9	RSGTDF	BBEABB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	19	SISPYSSSTS	BBBAAALBBB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBlBAABABBAB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	8	RASQSVSSAVA	BBABBAEABBB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	9	RSGTDF	BBEABB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	13	AASGFNLYYYSIH	BBBLBBAAABBBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	12	SISPYSSSTS	BBBAAALBBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBBBAABABBAB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	7	RASQSVSSAVA	BBABBAEABBB
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	8	RSGTDF	BBEABB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	11	SISPYSSSTS	BBBAAALBBB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBBBAABABBAB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	7	RASQSVSSAVA	BBABBAEABBB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	3	YSASSLYS	BLLABBBB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	9	RSGTDF	BBEABB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	11	SISPYSSSTS	BBBAAALBBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBlBAABABBAB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	8	RASQSVSSAVA	BBABBAEABBB
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBBLBABBB
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	9	RSGTDF	BBEABB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-1	20	SISPYSSSTS	BBBAAALBBB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBlBAABABBAB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	8	RASQSVSSAVA	BBABBAEABBB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	9	RSGTDF	BBEABB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	12	AASGFNLYYYSIH	BBBLBBAAABBBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H2	10	H2-10-*	-1	SISPYSSSTS	BBBAABABBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	100.0	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBlBAABABBAB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50.0	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	7	RASQSVSSAVA	BBABBAEABBB
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	28.6	L3	11	L3-11-*	-1	QQYpyYSSLIT	BBBBAABABBB
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	8	RSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022